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Sexually transmitted infections (STIs) in men often progress with few subjective symptoms; if left untreated, they may spread to partners and cause infertility or systemic complications. Major STIs include Chlamydia, gonorrhea, syphilis, genital herpes, genital warts (condyloma acuminata), trichomoniasis, HIV, and hepatitis B/C, each with distinct symptoms, incubation periods, and treatments. In men, common signs include “painful urination,” “urethral discharge (pus),” “lumps, blisters, or ulcers on the glans/penis,” and “swollen inguinal lymph nodes,” but Chlamydia and syphilis can remain asymptomatic for long periods. This article comprehensively covers the symptoms, incubation periods, testing methods, and treatments of the 7 main male STIs, along with a comparison of insurance-covered vs. self-pay costs and the right timing to get tested, all explained by Men’s Care Clinic physicians.
CONTENTS
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The STIs that men commonly contract are broadly classified into bacterial, viral, and protozoal infections by the causative pathogen. In each case the primary route of transmission is sexual contact, but symptom presentation, incubation periods, and treatment differ greatly.
Bottom line: the main STIs that men should be aware of in daily life are the following 7 types. They are listed in order of the highest reported case numbers and clinical importance.
| Disease | Cause | Incubation | Main symptoms (men) | Treatment |
|---|---|---|---|---|
| Chlamydia infection | Bacterium (Chlamydia trachomatis) | 1-3 weeks | Mild painful urination, clear discharge, often asymptomatic | Antibiotics (single-dose azithromycin etc.) |
| Gonorrhea | Bacterium (Neisseria gonorrhoeae) | 2-7 days | Severe painful urination, yellow-white pus, urethral meatus redness | Antibiotic injection (ceftriaxone) |
| Syphilis | Bacterium (Treponema pallidum) | 3 weeks (primary) | Painless lump (chancre), systemic rash | Antibiotics (penicillin IM or oral) |
| Genital herpes | Virus (HSV-1, HSV-2) | 2-10 days | Blisters, ulcers, pain, itching, repeated recurrences | Antiviral drugs (valacyclovir etc.) |
| Genital warts (condyloma) | Virus (HPV types 6, 11) | 3 weeks – 8 months | Wart-like growths on penis, glans, around the anus | Topical drugs, cryotherapy, electrocautery |
| Trichomoniasis | Protozoan (Trichomonas vaginalis) | 1-4 weeks | Mild painful urination, urethral discharge (often asymptomatic) | Antiprotozoal drugs (oral metronidazole) |
| HIV infection | Virus (HIV) | 2-4 weeks (acute) | Fever, fatigue, swollen lymph nodes, long asymptomatic period | Antiretroviral therapy (ART, continuous) |
*Beyond these, hepatitis B/C, amebiasis, LGV, scabies, and pediculosis pubis can also be transmitted through sexual contact.
Key point: As soon as you suspect “this might be an STI,” it’s important to get tested regardless of whether you have symptoms. Even mild Chlamydia, gonorrhea, syphilis, and HIV can lead to serious complications (epididymitis, infertility, neurosyphilis, AIDS) if left untreated.
In recent years, reported syphilis cases in Japan have surged. According to National Institute of Infectious Diseases data, cases have risen steadily since the late 2010s, exceeding 10,000 in 2022 — the highest on record. Three factors lie behind this trend:
Given this backdrop, “get tested regularly even without symptoms” and “always see a doctor after concerning contact” are the best ways to protect yourself and your partner.

By the location and form of symptoms, you can narrow STIs down to a degree. However, similar symptoms can be caused by multiple STIs, and co-infection (simultaneous infection with several STIs) is not uncommon. The final diagnosis must always be made at a medical facility.
| Symptom | Site | Suspected STIs |
|---|---|---|
| Painful/stinging urination | Urethra | Chlamydia, gonorrhea, trichomoniasis |
| Yellow-white pus | Urethral meatus | Gonorrhea (thickest pus), Chlamydia (clear to white) |
| Clear to cloudy discharge | Urethral meatus | Chlamydia, non-gonococcal urethritis |
| Blisters, ulcers, severe pain | Glans, penis, foreskin | Genital herpes (HSV-1/HSV-2) |
| Painless lump (hard, coin-shaped) | Glans, coronal sulcus | Syphilis (primary stage: chancre) |
| Cauliflower-like warts | Glans, penis, around anus | Genital warts (HPV) |
| Inguinal lymph node swelling/pain | Groin | Syphilis, herpes, LGV |
| Scrotal pain, swelling, fever | Scrotum | Chlamydial epididymitis, gonococcal epididymitis |
| Systemic rash (palms, soles) | Whole body | Syphilis (secondary stage) |
| Fever, fatigue, sore throat, swollen lymph nodes | Whole body | Acute HIV infection, syphilis, hepatitis B |
*This table is a reference only — do not self-diagnose. If something feels different, please consult a clinic early.
STIs can be present even without symptoms. If any of the following applies to you, testing is strongly recommended regardless of symptoms.
For some STIs, a window period applies — a waiting time until tests turn positive after exposure. Chlamydia and gonorrhea: 1-2 weeks; syphilis: 4-6 weeks; HIV antigen/antibody testing: roughly 4 weeks after exposure.

Chlamydia infection has the highest number of reported cases of any STI in Japan. The causative bacterium, Chlamydia trachomatis, causes urethritis, epididymitis, proctitis, and pharyngitis in men.
A key feature of male Chlamydia is that symptoms are often mild or absent. Infected men frequently transmit the infection to partners without realizing it, and because Chlamydia can cause infertility in women, proactive testing is important for men too. For details, see our article on Chlamydia symptoms in men.
Chlamydia is cured in nearly 100% of cases with appropriate antibiotic therapy. However, unless your partner is also treated simultaneously, “ping-pong reinfection” recurs — make sure partners are treated in parallel.

Gonorrhea is a bacterial STI caused by Neisseria gonorrhoeae, and is the second most commonly reported STI after Chlamydia. In men, symptoms are often pronounced: severe painful urination and yellow-white pus appear 2-7 days after exposure.
Co-infection of Chlamydia and gonorrhea is common — about 20-30% of cases involve both. For details, see male gonorrhea symptoms and the difference between gonorrhea and Chlamydia.
Gonorrhea has shown rapidly increasing resistance to oral antibiotics in recent years, and the WHO has issued warnings. Japanese guidelines also recommend injection therapy as the standard.
If you suspect an STI, start with a test (online consultation available, no initial consultation fee)
*Initial and follow-up consultations are free. Online consultation is also supported.

Syphilis is a sexually transmitted infection caused by the bacterium Treponema pallidum that has been increasing explosively in Japan recently. Cases have risen steadily since the late 2010s, exceeding 10,000 in 2022 — the highest on record.
Syphilis is characterized by symptoms that “appear and disappear” while the disease progresses. It moves through Primary (3 weeks after exposure) -> Secondary (3 months later) -> Latent -> Tertiary (years to over a decade later), eventually leading to cardiovascular and neurologic complications (neurosyphilis, cardiovascular syphilis). For details, see our article on syphilis symptoms and treatment.
| Stage | Time from exposure | Main symptoms |
|---|---|---|
| Primary | 3 weeks | Painless lump at exposure site (glans, penis, lip, etc. — chancre) and inguinal lymph node swelling. Resolves spontaneously in about a month |
| Secondary | 3 months – 3 years | Systemic rash including palms and soles (roseolar, psoriasiform), condyloma latum, hair loss, fever, fatigue |
| Latent | Years to over a decade | Asymptomatic (detectable only by blood test) |
| Tertiary/Quaternary | Over 10 years | Gummas (skin, bone, organs), neurosyphilis (general paresis, tabes dorsalis), cardiovascular syphilis (aortic aneurysm, aortic insufficiency) |
The greatest danger is thinking “I am cured because the symptoms went away” and ignoring it. Primary and secondary symptoms resolve spontaneously, but the bacterium keeps multiplying inside the body and eventually causes lethal complications.
Syphilis can be completely cured with antibiotics if treated early. Detection and treatment before progression to neurosyphilis or cardiovascular syphilis is critically important.

Genital herpes is an infection caused by herpes simplex virus (HSV-1 or HSV-2). Blisters and ulcers form on the genitals with severe pain. Once infected, the virus stays latent in nerve ganglia and reactivates with triggers like illness, stress, UV exposure, or sexual activity.
First-episode symptoms are intense and can include fever, general fatigue, and inguinal lymph node swelling. Recurrences tend to be milder. See our article on genital herpes for full details.
For genital herpes, there is no treatment that fully eliminates the virus from the body — antiviral drugs aim to relieve symptoms and suppress recurrence. Starting treatment early during a recurrence (within 24 hours of symptom onset) can make episodes milder.

Genital warts (condyloma acuminata) is an STI caused by human papillomavirus (HPV, mainly types 6 and 11). Cauliflower-like warts appear on the penis, glans, coronal sulcus, and around the anus. They usually do not cause much pain or itching, but their appearance has a significant psychological impact.
HPV is divided into “high-risk types” (types 16, 18, etc.) that can cause cervical cancer, and “low-risk types” (types 6, 11, etc.) that cause condyloma. See our article on genital warts for full details.
Genital warts can be prevented with HPV vaccination. In Japan, the 4-valent vaccine (Cervarix, Gardasil) and 9-valent vaccine (Silgard 9) are approved, and men can also receive optional vaccination (self-pay).

As a general rule, STI testing is “insurance-covered if symptomatic” and “self-pay for asymptomatic/elective testing.” Testing methods vary by disease and may combine urine tests, blood tests, discharge testing, and lesion swabs.
Results are usually available in 2-7 days (rapid kits can return same-day results in urgent cases). For preparation, men should typically wait at least 2 hours after urination before a urine test.
| Test | Sample | Insurance (symptomatic) | Self-pay (asymptomatic) |
|---|---|---|---|
| Chlamydia / gonorrhea | Urine, pharyngeal/rectal swab | JPY 3,000-4,000 (30% co-pay) | JPY 5,000-8,000 |
| Syphilis (RPR/TPHA) | Blood | JPY 1,500-2,500 | JPY 3,000-5,000 |
| HIV antigen/antibody test | Blood | Insurance-covered if symptomatic | JPY 3,000-5,000 (free at public health centers) |
| Genital herpes (with lesion) | Lesion swab / blood | JPY 3,000-5,000 | JPY 5,000-8,000 |
| Hepatitis B/C | Blood | Insurance-covered if symptomatic | JPY 3,000-5,000 each |
| Comprehensive set (4-6 items) | Blood, urine | – | JPY 15,000-25,000 |
*Prices are guideline figures. Costs vary by clinic and the contents of the test set. HIV testing is available anonymously and free at public health centers.
STI testing has a “window period” (the time between exposure and when a test can detect infection). Testing too soon after exposure will not give the correct result. Recommended timing by disease is:
A common recommended pattern is initial testing 1-2 weeks after concerning contact, followed by retesting at 3 months. If you are unsure when to test, please consult a doctor first.
Men’s Care Clinic operates three branches – Shinbashi, Akihabara, and Omotesando – and is a men’s-only clinic. With medical partnership with Toyosu Hospital, we maintain a safe care system and offer comprehensive testing and treatment for STIs.
In response to patients who say “I do not want to be seen by other patients” or “I want to avoid being recognized,” we provide completely appointment-based, private-room consultations, with male-only staff available if requested.
For those who find it “embarrassing to visit a clinic” or “too busy to come in,” online consultation is also available. You can have a video consultation by smartphone or PC and have a test kit shipped to your home, with prescription medication mailed (some conditions excluded).
*Conditions requiring palpation (such as warts or syphilis) require in-person care.
Appointment-only, strict privacy, no initial/follow-up consultation fee
Shinbashi, Akihabara, Omotesando branches / Online consultation available
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If you suspect an STI, start with a test (online consultation available, no initial consultation fee)
*Initial and follow-up consultations are free. Online consultation supported. *LINE messages are informational only; diagnosis and prescription decisions are made by a physician at consultation.
Below are common questions from our patients about STI symptoms, testing, and treatment, answered clearly by Men’s Care Clinic physicians.
In Japan, Chlamydia infection has the highest number of reported male STI cases, followed by gonorrhea, genital herpes, genital warts, and syphilis. In particular, syphilis has surged since the late 2010s, exceeding 10,000 cases in 2022 — the highest on record.
Note that many people are infected silently regardless of symptoms. Fewer reported cases does not always mean less infection — regular testing for early detection is essential.
Yes — many STIs can be transmitted through oral sex. Chlamydia and gonorrhea can cause pharyngeal infection (pharyngeal Chlamydia/gonorrhea), which is often asymptomatic and a high-risk transmission route.
Oral sex with someone who has primary-stage syphilis (chancre) on the lip or oral cavity can also transmit syphilis. Genital herpes (HSV-1) can spread mutually between lips and genitals. HIV transmission through oral sex is also not zero.
Condom use is recommended even for oral sex, and if pharyngeal infection is suspected, pharyngeal swab testing is needed.
Condoms greatly reduce STI risk but do not provide complete prevention. Some STIs are transmitted through contact with areas not covered by a condom (scrotum, mons pubis, around the anus, oral cavity).
The best prevention combines “condom use + regular testing + open communication with partners.” HPV vaccination is also effective for HPV prevention.
Test timing should account for each disease’s window period (time from exposure to a positive result). Common guidelines are:
If your partner is diagnosed with an STI, get tested and treated immediately regardless of symptoms. This prevents “ping-pong reinfection.”
As a rule, insurance covers testing when symptoms are present, while asymptomatic elective testing is self-pay. Specifically, insurance applies when you have symptoms (painful urination, discharge, blisters, lumps) or have had high-risk contact with a partner diagnosed with an STI.
On the other hand, testing for “I am worried but have no symptoms,” “regular checkups,” or “pre-marital screening” is self-pay. Costs vary by number of items – typically JPY 3,000-8,000 for a single test and JPY 15,000-25,000 for a comprehensive set.
For HIV testing, public health centers nationwide offer anonymous, free testing. This is a good option for those who value anonymity or want to minimize costs.
After completing antibiotic or antiviral treatment, retesting for “cure confirmation (eradication check)” is needed. Retesting timing by disease:
Do not self-diagnose “cured because symptoms are gone” – always follow the doctor’s instructions and complete retesting.
Yes – be sure to tell your partner and have them tested and treated. If your partner is infected, you will be re-infected through “ping-pong infection” even after you have been treated.
For Chlamydia, gonorrhea, and trichomoniasis, notifying all partners from the past 2 months is recommended. For syphilis and HIV, notification of partners from the past 3 months to 1 year is needed.
If telling partners directly is difficult, “partner notification services” at public health centers or medical facilities are an option. Some services allow anonymous contact, so ask your doctor.
HIV cannot currently be “cured,” but with continuous antiretroviral therapy (ART), it can be controlled – preventing AIDS and allowing nearly normal life. Once feared as a “fatal disease” until the 1990s, HIV has transformed into a manageable chronic condition thanks to advances in treatment.
Continuous appropriate treatment can suppress blood viral load below the detection limit, and in that state (U=U: Undetectable = Untransmittable) sexual transmission risk to partners is effectively zero. Early detection and treatment are critical.
If you have had a concerning exposure, post-exposure prophylaxis (PEP) within 72 hours may prevent infection. Please contact a medical facility urgently.
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